The following files contain the model tree (S.tm), true tree (S.tt), and true alignment (orig.aln).
Refer to the online Appendix for the model conditions corresponding to the subdirectory structures.
BAliBASE simulated data (4.4MB)
File structure: M01D00.9/W1/R001/ means model tree 01, diameter 0.9, weight (indel ratio) setting is 1
(every model tree simulation uses only one indel setting so you can ignore W1 here).