Bayesian Approach to Efficient Differential Allocation for Resampling-Based Significance Testing

Companion website to BMC Bioinformatics Jensen et al., 2009

R script for simulated GWAS data analysis

1. shortcut.r, our shortcut implementation.
2. diff_alloc.r, our algorithm.
3. exp_shortcut.r, top level R script for running the experiment using simulated GWAS data.

      Usage: R --no-save idx=[idx] < exp_shortcut.r  
      Use idx=0 to 29 to run 30 replicates in parallel.
    

4. draw_exp_shortcut.r, R script for generating figures.

R script for breast cancer microarray data analysis

Microarray data (Hedenfalk et al)